Kim,Seungchan

  Seungchan Kim, Ph.D. Professor ECE 
  • Office: Electrical Engineering Building room 324
  • Phone: 936-261-
  • E-mail:  sekim@pvamu.edu

Resume

Education:

 

Publications:

Refereed Archived Journal Articles

  1. Tran, H., Speyer, G., Kiefer, J., Kim, S. (2017) Contextualization of Drug-Mediator Relations Using Evidence Networks. BMC Medical Informatics and Decision Making (in press).
  2. Yeri, A., A. Courtright, R. Reiman, E. Carlson, T. Beecroft, A. Janss, A. Siniard, R. Richholt, C. Balak, J. Rozowsky, R. Kitchen, E. Hutchins, J. Winarta, R. McCoy, M. Anastasi, Kim, M. Huentelman and K. Van Keuren-Jensen (2017). Total Extracellular Small RNA Profiles from Plasma, Saliva, and Urine of Healthy Subjects. Scientific Report 7: 44061.
  3. Vitucci, M., D. M. Irvin, R. S. McNeill, R. S. Schmid, J. M. Simon, H. D. Dhruv, M. B. Siegel, A. M. Werneke, R. E. Bash, Kim, M. E. Berens and C. R. Miller (2017). Genomic profiles of low-grade murine gliomas evolve during progression to glioblastoma. Neuro Oncology (in press)
  4. Cancer Target Discovery and Development Network. (2016) Transforming Big Data into Cancer-Relevant Insight: An Initial, Multi-Tier Approach to Assess Reproducibility and Relevance. Mol Cancer Res. 2016 Aug;14(8):675-82. doi: 10.1158/1541-7786.MCR-16-0090.
  5. Legendre C.R., Demeure M.J., Whitsett T.G., Gooden C.G., Bussey K.J., Jung S., Waibhav T., Kim S., Salhia B. (2016) Pathway implications of aberrant global methylation in adrenocortical cancer, PLoS ONE 2016 Mar 10;11(3):e0150629
  6. Zheng S., Cherniack A.D., Dewal N., Moffitt R.A., Danilova L., Murray B.A., Lerario A.M., Else T., Knijnenburg T.A., Ciriello G., Kim S., Assie G., Morozova O., Akbani R., Shih J., Hoadley K.A., Choueiri T.K., Waldmann J., Mete O., Robertson A.G., Raphael B.J., Meyerson M., Demeure M.J., Beuschlein F., Gill A.J., Sidhu S.B., Latronico A.C., Fragoso M.C., Cope L.M., Kebebew E., Habra M.A., Whitsett T.G., Bussey K.J., Rainey W.E., Asa S.L., Bertherat J., Fassnacht M., Wheeler D.A., The Cancer Genome Atlas Research Network, Hammer G.D., Giordano T.J., Verhaak R.G.W. (2016) Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma, Cancer Cell 2016 Aug 8;30(2):363. doi: 10.1016/j.ccell.2016.07.013.
  7. Tibes, R., McDonagh, K.T., Lekakis, L., Bogenberger, J.M., Kim, S., Frazer, N., Mohrland, S., Bassett, D., Garcia, R., Schroeder, K., Shanmugam, V., Carpten, J., Hagelstrom, R.T., Beaudry, C., Von Hoff, D., Shea, T.C. (2014) Phase I study of the novel Cdc2/CDK1 and AKT inhibitor terameprocol in patients with advanced leukemias, Invest New Drugs, Dec 2014 doi: 10.1007/s10637-014-0198-y
  8. Staren, E. D., Braun, D., Tan, B., Gupta, D., Kim, S., Kramer, K. Markman, M. (2014) Initial experience with genomic profiling of heavily pretreated breast cancers, Annals of Surgical Oncology, Oct. 2014 21(10): 3216-22. doi:10.1245/s10434-014-3925-x
  9. Verdicchio, M., Kim, S. (2014) Template-Based Intervention in Boolean Network Models of Biological Systems, EURASIP Bioinformatics and Systems Biology, 2014:11 doi:10.1186/s13637-014-0011-4

 

Collaborators and Co-Editors.

1.                  Ahmann, G.J. Mayo Scottsdale, Arizona
2.                  Akbani R. M.D. Anderson Cancer Center
3.                  Almeida, M.Q. Universidade de São Paulo, Brazil
4.                  Asa S.L. University Health Network, Ontario, Canada
5.                  Assie G. Université Paris Descartes, France
6.                  Baggerly, K. M.D. Anderson Cancer Center
7.                  Baker A.S. Translational Genomics Research Institute
8.                  Berens, M. Translational Genomics Research Institute
9.                  Bertherat J. Université Paris Descartes, France
10.              Beuschlein F. Klinikum der Universität München, Germany
11.              Bittner, M. Translational Genomics Research Institute
12.              Bomprezzi R. Barrow Neurological Institute at St. Joseph’s Hospital and Medical Center
13.              Bondaruk, J. M.D. Anderson Cancer Center
14.              Braggio, E. Mayo Scottsdale, Arizona
15.              Braun, D. Cancer Treatment Centers of America, Arizona
16.              Burgos, K.L. Translational Genomics Research Institute
17.              Bussey K.J. NantOmics
18.              Carpten, J. University of Southern California
19.              Charles, B. Colorado State University
20.              Cheng, T. M.D. Anderson Cancer Center
21.              Cherba, D. Van Andel Research Institute
22.              Cherni, I. Translational Genomics Research Institute
23.              Cherniack A.D. The Eli and Edythe L. Broad Institute of MIT and Harvard University
24.              Childress, M. Purdue University
25.              Choi, W. M.D. Anderson Cancer Center
26.              Choueiri T.K. Harvard Medical School
27.              Ciriello G. University of Lausanne, Switzerland & Memorial Sloan Kettering Cancer Center
28.              Clemons, P.A. The Eli and Edythe L. Broad Institute of MIT and Harvard University
29.              Cope L.M. Johns Hopkins University
30.              Courtright, A. Translational Genomics Research Institute
31.              Czerniak, B. M.D. Anderson Cancer Center
32.              Danilova L. Johns Hopkins University
33.              Davis, B. Translational Genomics Research Institute
34.              Demeure M.J. Translational Genomics Research Institute
35.              Dewal N. Baylor College of Medicine
36.              Dinney, C. M.D. Anderson Cancer Center
37.              Dispenzieri, A. Mayo Clinic, Rochester, MN
38.              Ehrhart, E.J. Colorado State University
39.              Else T. University of Michigan
40.              Fassnacht M. University of Würzburg, Germany
41.              Fehling, H University of Wisconsin
42.              Fonseca, R. Mayo Scottsdale, Arizona
43.              Fragoso M.C. Universidade de São Paulo, Brazil
44.              Gale, M. Translational Genomics Research Institute
45.              Ghaffari, L. Translational Genomics Research Institute
46.              Gill A.J. University of Sydney
47.              Giordano T.J. University of Michigan
48.              Gooden C.G. Translational Genomics Research Institute
49.              Gupta, D. Cancer Treatment Centers of America, Arizona
50.              Habra M.A. M.D. Anderson Cancer Center
51.              Hammer G.D. University of Michigan
52.              Henderson, K.J. Mayo Clinic, Rochester, MN
53.              Henson, M. University of Minnesota
54.              Hoadley K.A. University of North Carolina
55.              Hoffman-Censits, J. Thomas Jefferson University Hospital
56.              Jacobus, S. Dana Farber Cancer Institute
57.              Javaherian, A. Translational Genomics Research Institute
58.              Jelinek, D.F. Mayo Clinic, Rochester, MN
59.              Joy, A. Dignity Health
60.              Jung, S. Gwacheo Medical School, Korea
61.              Kebebew E. NIH/NCI
62.              Keuren-Jensen K.V. Translational Genomics Research Institute
63.              Khanna, C. NIH/NCI
64.              Kiefer, J. Translational Genomics Research Institute
65.              Kingsley, C. Translational Genomics Research Institute
66.              Kitchell, B. Michigan State University
67.              Knijnenburg T.A. Institute for Systems Biology
68.              Kramer, K. Cancer Treatment Centers of America, Arizona
69.              Kumar, L. Clinical Reference Laboratory, Lenexa, Kansas
70.              Lana, S. Colorado State University
71.              Larson, D. Mayo Clinic, Rochester, MN
72.              Lee, I. M.D. Anderson Cancer Center
73.              Legendre C.R. Translational Genomics Research Institute
74.              Lerario A.M. Universidade de São Paulo, Brazil & University of Michigan
75.              Levy, J. Hackensack University Medical Center
76.              Majewski, T. M.D. Anderson Cancer Center
77.              Markman, M. Cancer Treatment Centers of America, Arizona
78.              Mazcko, C. NIH/NCI
79.              McConkey, D.J. Johns Hopkins University
80.              Melquist, J. M.D. Anderson Cancer Center
81.              Mete O. University Health Network, Ontario, Canada
82.              Metpally, R. Translational Genomics Research Institute
83.              Meyerson M. The Eli and Edythe L. Broad Institute of MIT and Harvard University & Harvard Medical School
84.              Mills, G. B. M.D. Anderson Cancer Center
85.              Misra, A. Dignity Health
86.              Moffitt R.A. University of North Carolina
87.              Morozova O. University California Santa Cruz
88.              Murray B.A. The Eli and Edythe L. Broad Institute of MIT and Harvard University
89.              Neff, M. Van Andel Research Institute
90.              Paoloni, M. NIH/NCI
91.              Perkins, L.M. Hackensack University Medical Center
92.              Plimack, E.R. M.D. Anderson Cancer Center
93.              Porten, S. M.D. Anderson Cancer Center
94.              Pretzsch, S. M.D. Anderson Cancer Center
95.              Rainey W.E. University of Michigan
96.              Rajkumar, S.V. Mayo Clinic, Rochester, MN
97.              Ramesh, A. Microsoft Research
98.              Raphael B.J. Brown University
99.              Reiser, M. Arizona State University
100.          Rhodes, S. Barrow Neurological Institute at St. Joseph’s Hospital and Medical Center
101.          Robertson A.G. University of Michigan
102.          Roth, B. M.D. Anderson Cancer Center
103.          Salhia B. University of Southern California
104.          Schreiber, S. The Eli and Edythe L. Broad Institute of MIT and Harvard University
105.          Shao, L. University of Michigan
106.          Shapiro, W. R. Dignity Health
107.          Shea, T.C. Mayo Clinic, Arizona
108.          Shih J. The Eli and Edythe L. Broad Institute of MIT and Harvard University
109.          Sidhu S.B. University of Sydney
110.          Siefker-Radtke, A. M.D. Anderson Cancer Center
111.          Smirnov, I. University of San Francisco
112.          Staren, E. D. Ashion Advanced Individual Medicine, LLC
113.          Tan, B. Cancer Treatment Centers of America, Arizona
114.          Tembe, W. Translational Genomics Research Institute
115.          Therneau, T.M. Mayo Clinic, Rochester, MN
116.          Tibes, R. Mayo Clinic, Arizona
117.          Tran, M. M.D. Anderson Cancer Center
118.          Trent, J. Translational Genomics Research Institute
119.          Vail, D. University of Wisconsin
120.          Van Wier, S. Mayo Scottsdale, Arizona
121.          Verdicchio, M. The Citadel University
122.          Verhaak R.G.W M.D. Anderson Cancer Center
123.          Vesole, D.H. Hackensack University Medical Center
124.          Von Hoff D. Translational Genomics Research Institute
125.          Waldmann J. University Hospital Giessen and Marburg, Germany
126.          Webb, C. Webb TransMed Services LLC
127.          Wheeler D.A. Baylor College of Medicine
128.          Whitsett T.G. Translational Genomics Research Institute
129.          Willis, D. Fox Chase Cancer Center Anderson Cancer Center
130.          Wu, H.T. Brown University
131.          Zhang, S. M.D. Anderson Cancer Center

 

Graduate Advisors and Postdoctoral Sponsors.

Graduate Advisor:       Edward Dougherty, PhD (Robert M. Kennedy ’26 Chair, and Distinguished Professor of Electrical Engineering at Texas A&M University)

Post-doctoral advisor: Jeffery Trent, PhD (President and Research Director, Translational Genomics Research Institute)

 

Thesis Advisor and Postgraduate-Scholar Sponsor.

Post-doctoral advisor

Sungwon Jung, Ph.D.

Assistant Professor, Gwacheo Medical School, Korea
Sara Nasser, Ph.D. Staff Scientist, Translational Genomics Research Institute
Taehoon Chung, Ph.D. Research Associate, National University of Singapore
 

Ph.D. advisor

Ina Sen, Ph.D.

Paypal, Inc.
Archana Ramesh, Ph.D. Microsoft Research
Michael Verdicchio, Ph.D. Associate Professor, The Citadel University
 

MS advisor

Siddharth Raghavan

Zachary Henkel Microsoft
Younghee Tak
Neha Somani
Siddarth G. Selvaraj, Ph.D.
Sidharth Gupta
Robert Trevino US Air Force Research Laboratory (AFRL)